Contextual DNA Regime Interval Mapping¶
- Task ID:
biology.contextual_dna_regime_mapping - Domain:
biology - Subdomain:
computational_genomics - Status:
test - Tags:
computational_genomics,dna_segmentation,sequence_regimes,adjacent_base_composition,interval_mapping
Public Summary¶
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Example B1 Prompt Excerpt¶
# B1: Three-Regime DNA Interval Mapping with Log-Space Dynamic Programming
## Background
You are given several chromosome-like DNA segments in `data/sequence_bundle.fasta`.
The positive intervals are sustained enriched sequence regimes. The data also
contain shorter local composition perturbations that may look enriched in
simple sliding windows but should not be reported as positive intervals.
Implement a persistent three-regime adjacent-pair hidden sequence model from
scratch:
Notes¶
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